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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
560
total RNA-seq
84
RNA microarray
34
pCHi-C
26
ATAC-seq
11
ChIP-seq
11
Hi-C
6
single cell RNA-seq
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
570
Transcription
26
DNA accessibility
11
3D chromatin structure
11
DNA binding
Target of assay
5
transcription factor
3
control
3
histone
3
histone modification
3
narrow histone mark
Date released
670
February, 2021
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
176
May, 2022
129
February, 2023
124
August, 2017
120
May, 2019
118
July, 2018
108
July, 2019
82
November, 2017
80
April, 2019
64
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
25
February, 2020
19
April, 2020
18
September, 2020
16
January, 2021
16
November, 2020
16
October, 2018
15
May, 2023
10
December, 2019
6
October, 2017
5
April, 2018
5
March, 2023
4
March, 2019
4
October, 2022
3
January, 2018
1
August, 2022
Available data
604
tsv
588
bam
571
bigWig
89
txt
fastq
26
bed narrowPeak
12
bedpe bed3+
11
hic
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
ibed
Organism
735
Homo sapiens
Biosample type
585
tissue
109
cell line
34
in vitro differentiated cells
6
stem cell
5
primary cell
Organ
457
connective tissue
387
adipose tissue
150
bone element
73
heart
70
blood vessel
70
vasculature
66
artery
40
pancreas
32
epithelium
10
kidney
8
skeleton
6
limb
6
liver
5
musculature of body
2
brain
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
727
AMP
7
T1D
4
community
1
ITG
Genome assembly (visualization)
606
hg19
585
GRCh38
Lab
734
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
145
inconsistent ontology term
5
audit script error
1
inconsistent replicate
files.file_type!
fastq
BIOSAMPLE
ASSAY
739 results
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total RNA-seq
RNA microarray
pCHi-C
ATAC-seq
ChIP-seq
Hi-C
single cell RNA-seq
snDrop-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
adipose tissue
381
1
bone element
84
bone tissue
58
islet of Langerhans
2
2
2
kidney
5
+ See 32 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
28
2
1
EndoC-BH1
1
1
HepG2
1
1
early embryonic cell
2
+ See 5 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
primary cell
osteoblast
1
1
1
chondrocytes
1
endothelial cell of umbilical vein
1
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