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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 103ATAC-seq
  • 17total RNA-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 2snATAC-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1single cell RNA-seq
Assay category
  • 105DNA accessibility
  • 18Transcription
Date released
  • 670February, 2021
  • 399May, 2021
  • 341May, 2020
  • 319August, 2021
  • 314October, 2019
  • 218June, 2019
  • 176May, 2022
  • 129February, 2023
  • 124August, 2017
  • 120May, 2019
  • 118July, 2018
  • 108July, 2019
  • 82November, 2017
  • 80April, 2019
  • 64March, 2020
  • 61November, 2019
  • 47September, 2023
  • 40May, 2024
  • 25February, 2020
  • 19April, 2020
  • 18September, 2020
  • 16January, 2021
  • 16November, 2020
  • 16October, 2018
  • 15May, 2023
  • 10December, 2019
  • 6October, 2017
  • 5April, 2018
  • 5March, 2023
  • 4March, 2019
  • 4October, 2022
  • 3January, 2018
  • 1August, 2022
Available data
  • fastq
  • 65bed narrowPeak
  • 16tsv
  • 10bed bed3
  • 7txt
  • 4bed bed3+
  • 3bed bedgraph
  • 3bigWig
Organism
  • 128Homo sapiens
Biosample type
  • 95tissue
  • 16in vitro differentiated cells
  • 12primary cell
  • 6cell line
Organ
  • 36heart
  • 35artery
  • 35blood vessel
  • 35vasculature
  • 31eye
  • 19pancreas
  • 15epithelium
  • 14connective tissue
  • 8bone element
  • 8skeleton
  • 1adipose tissue
  • 1brain
Project
  • 106AMP
  • 23T1D
Genome assembly (visualization)
  • 45hg19
  • 35GRCh38
Lab
  • 103AMP-T2D consortium
  • 23Kyle Gaulton, UCSD
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 11inconsistent ontology term
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

129 results

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Clear Filters
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
tissue
coronary artery35
islet of Langerhans1152
retina152
pigmented layer of retina122
acetabular part of hip bone11
in vitro differentiated cells
chondrocyte5
immature adipocyte22
adipocyte11
preadipocyte11
Progenitor cell of Hypothalamus (neural progenitor cell)1
primary cell
gabaergic neuron3
glutamatergic neuron3
microglial cell/astrocyte3
oligodendrocyte3
cell line
EndoC_BH1321
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