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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
total RNA-seq
3
Hi-C
2
ATAC-seq
1
ChIP-seq
1
pCHi-C
Assay category
4
Transcription
3
3D chromatin structure
2
DNA accessibility
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
82
May, 2022
63
June, 2019
35
October, 2019
26
February, 2021
26
May, 2021
24
August, 2017
23
July, 2019
16
November, 2019
15
February, 2023
12
May, 2019
11
March, 2020
6
August, 2021
6
December, 2019
6
November, 2020
4
April, 2018
3
October, 2022
2
February, 2020
1
January, 2018
Available data
7
bigWig
6
tsv
5
bam
3
bedpe bed3+
3
hic
1
bed narrowPeak
Organism
11
Homo sapiens
Biosample type
5
cell line
5
tissue
1
primary cell
Organ
14
pancreas
7
heart
6
epithelium
5
musculature of body
4
blood vessel
4
vasculature
3
liver
2
brain
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
8
AMP
3
T1D
Genome assembly (visualization)
10
hg19
5
GRCh38
Lab
11
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
11 results
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Clear Filters
total RNA-seq
Hi-C
ATAC-seq
ChIP-seq
pCHi-C
cell line
EndoC_BH1
2
2
1
tissue
psoas muscle
2
2
1
primary cell
endothelial cell of umbilical vein
1
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