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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
100
ATAC-seq
50
ChIP-seq
18
single cell RNA-seq
1
pCHi-C
Assay category
208
Transcription
100
DNA accessibility
50
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
670
February, 2021
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
May, 2022
129
February, 2023
124
August, 2017
120
May, 2019
118
July, 2018
108
July, 2019
82
November, 2017
80
April, 2019
64
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
25
February, 2020
April, 2020
18
September, 2020
16
January, 2021
16
November, 2020
16
October, 2018
15
May, 2023
10
December, 2019
6
October, 2017
5
April, 2018
5
March, 2023
4
March, 2019
4
October, 2022
3
January, 2018
1
August, 2022
Available data
283
bam
263
bigWig
189
tsv
50
tagAlign
fastq
27
bed narrowPeak
19
zippedFastqFolder
Organism
359
Homo sapiens
Biosample type
193
tissue
165
primary cell
1
cell line
Organ
194
liver
Project
296
AMP
45
T1D
18
HPAP
Genome assembly (visualization)
260
hg19
207
GRCh38
Lab
296
AMP-T2D consortium
45
Kyle Gaulton, UCSD
18
Klaus Kaestner, Upenn
Audit category:
8
inconsistent ontology term
files.file_type!
fastq
month_released!
April, 2020
May, 2022
BIOSAMPLE
ASSAY
359 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
tissue
liver
143
50
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
Langerhans cell
18
macrophage
11
B cell
2
2
+ See 25 more…
cell line
HepG2
1
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