Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
single cell RNA-seq
22
snATAC-seq
20
ATAC-seq
20
total RNA-seq
Assay category
54
Transcription
42
DNA accessibility
Date released
644
February, 2021
373
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
124
August, 2017
118
July, 2018
115
May, 2019
114
February, 2023
96
May, 2022
95
July, 2019
82
November, 2017
80
April, 2019
58
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
25
February, 2020
19
April, 2020
18
September, 2020
16
January, 2021
16
October, 2018
15
May, 2023
10
November, 2020
6
October, 2017
5
March, 2023
4
December, 2019
4
March, 2019
3
January, 2018
1
April, 2018
1
August, 2022
1
October, 2022
0
November, 2018
Available data
fastq
111
bam
111
bed narrowPeak
100
bigWig
73
bigBed narrowPeak
54
zippedFastqFolder
10
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
7
txt
1
csv
Organism
96
Homo sapiens
Biosample type
54
primary cell
42
tissue
Organ
epithelium
80
pancreas
40
liver
2
musculature of body
Project
54
HPAP
42
AMP
Genome assembly (visualization)
21
hg19
Lab
54
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
2
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
fastq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
96 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
snATAC-seq
ATAC-seq
total RNA-seq
primary cell
Langerhans cell
33
21
tissue
liver
20
20
skeletal muscle tissue
1
1
Download