Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1071total RNA-seq
  • 943ChIP-seq
  • 374ATAC-seq
  • 230single cell RNA-seq
  • 195DNase-seq
  • 87RNA microarray
  • 55pCHi-C
  • 46snATAC-seq
  • 24Hi-C
  • 17WGBS
  • 16small RNA-seq
  • 15RRBS
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3FAIRE-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1321Transcription
  • 943DNA binding
  • 618DNA accessibility
  • 33DNA methylation
  • 243D chromatin structure
  • 1DNA sequencing
Target of assay
  • 736histone
  • 736histone modification
  • 379narrow histone mark
  • 357broad histone mark
  • 152control
  • 58transcription factor
  • 24RNA binding protein
  • 7recombinant protein
Date released
  • 644February, 2021
  • 341May, 2020
  • 338May, 2021
  • 315August, 2021
  • 296October, 2019
  • 214June, 2019
  • 118May, 2019
  • 110February, 2023
  • 104August, 2017
  • 102July, 2019
  • 96May, 2022
  • 82November, 2017
  • 80April, 2019
  • 50March, 2020
  • 47September, 2023
  • 40May, 2024
  • 24February, 2020
  • 19April, 2020
  • 18September, 2020
  • 15May, 2023
  • 10December, 2019
  • 8January, 2021
  • 6November, 2019
  • 6November, 2020
  • 6October, 2017
  • 5March, 2023
  • 3January, 2018
  • 1October, 2022
Available data
  • 2703bam
  • 2546bigWig
  • 1603bed narrowPeak
  • 1183tsv
  • 951bigBed narrowPeak
  • fastq
  • 379tagAlign
  • 301bed broadPeak
  • 278bigBed broadPeak
  • 244bed bed3+
  • 155txt
  • 73zippedFastqFolder
  • 64xls
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 16bedpe bed3+
  • 16hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3091Homo sapiens
Biosample type
  • 2108tissue
  • 591primary cell
  • 250in vitro differentiated cells
  • 143cell line
  • 6stem cell
Organ
  • 583connective tissue
  • pancreas
  • 447adipose tissue
  • 393heart
  • 354kidney
  • 326liver
  • 267epithelium
  • 265brain
  • 230vasculature
  • 227blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 94musculature of body
  • 61eye
  • 43nerve
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 10embryo
  • 9blood
  • 9bodily fluid
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 2745AMP
  • 210T1D
  • 72HPAP
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 1910hg19
  • 1898GRCh38
Lab
  • 2400AMP-T2D consortium
  • 292Kyle Gaulton, UCSD
  • 142Katalin Susztak, Upenn
  • 72Klaus Kaestner, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 34Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 1ITG
Audit category:
  • 266inconsistent ontology term
  • 11audit script error
  • 1inconsistent replicate
files.file_type!
  • fastq
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

3098 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
WGBS
small RNA-seq
RRBS
STARR-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
snDrop-seq
Capture-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
...and 5 more
tissue
adipose tissue38231
liver167782011121
kidney49277564136111
bone element84
heart left ventricle33521831141
primary cell
monocyte5485151
Langerhans cell5121
CD8-positive, alpha-beta T cell43321
naive thymus-derived CD4-positive, alpha-beta T cell12221
CD4-positive, alpha-beta memory T cell22
in vitro differentiated cells
cardiomyocytes593
embryonic stem cell53761
neural progenitor cell72110
adipocyte51481
cardiac precursors (cardiac muscle cell)1911
cell line
smooth muscle cell of the coronary artery5268
HepG29181212
H1-hESC8
EndoC_BH132
RCC 7860 HIF1a re-expression14
stem cell
SB Ad3.111
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego