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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
37
DNase-seq
12
total RNA-seq
10
ATAC-seq
9
snATAC-seq
6
Hi-C
3
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
98
DNA binding
56
DNA accessibility
15
Transcription
6
3D chromatin structure
4
DNA methylation
Target of assay
76
histone
76
histone modification
50
broad histone mark
26
narrow histone mark
22
control
Date released
69
October, 2019
43
June, 2019
24
August, 2017
10
July, 2019
8
January, 2021
7
May, 2019
6
February, 2021
5
March, 2020
4
February, 2020
2
January, 2018
2
May, 2022
Available data
191
bam
175
bigWig
168
bed narrowPeak
147
bigBed narrowPeak
fastq
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
15
tagAlign
15
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
180
Homo sapiens
Biosample type
157
tissue
22
primary cell
1
cell line
Organ
583
connective tissue
475
pancreas
447
adipose tissue
393
heart
354
kidney
326
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
172
AMP
8
T1D
Genome assembly (visualization)
130
hg19
111
GRCh38
Lab
172
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
1
audit script error
files.file_type!
fastq
organ_slims!
pericardium
BIOSAMPLE
ASSAY
180 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
snATAC-seq
Hi-C
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
tibial nerve
35
2
5
1
skeletal muscle tissue
22
1
1
1
2
1
1
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
+ See 12 more…
primary cell
skeletal muscle satellite cell
8
1
1
peripheral blood mononuclear cell
8
skeletal muscle cell
2
1
1
cell line
GM12878
1
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