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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ChIP-seq
84
RNA microarray
79
total RNA-seq
30
DNase-seq
15
ATAC-seq
4
pCHi-C
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
200
DNA binding
86
Transcription
46
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
177
histone
177
histone modification
113
narrow histone mark
64
broad histone mark
26
control
Date released
150
February, 2021
86
October, 2019
82
November, 2017
30
June, 2019
28
May, 2019
18
July, 2019
12
February, 2020
9
February, 2023
6
October, 2017
3
March, 2020
1
May, 2021
Available data
309
bam
280
bigWig
211
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
88
txt
85
tsv
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
fastq
5
bed bed3
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
425
Homo sapiens
Biosample type
411
tissue
13
primary cell
1
cell line
Organ
583
connective tissue
475
pancreas
447
adipose tissue
393
heart
354
kidney
326
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
424
AMP
1
T1D
Genome assembly (visualization)
268
GRCh38
217
hg19
Lab
424
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
87
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
425 results
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ChIP-seq
RNA microarray
total RNA-seq
DNase-seq
ATAC-seq
pCHi-C
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
bone element
84
bone tissue
58
brain
11
1
12
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
+ See 91 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 3 more…
cell line
MCF-7
1
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