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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
DNase-seq
29
ChIP-seq
23
total RNA-seq
9
Hi-C
6
small RNA-seq
5
RRBS
5
pCHi-C
4
ATAC-seq
4
single cell RNA-seq
1
FAIRE-seq
1
WGBS
1
snATAC-seq
Assay category
69
DNA accessibility
33
Transcription
29
DNA binding
9
3D chromatin structure
6
DNA methylation
Target of assay
histone
210
histone modification
126
narrow histone mark
84
broad histone mark
32
control
Date released
65
June, 2019
28
July, 2019
14
February, 2020
12
November, 2017
9
March, 2020
9
October, 2019
5
August, 2017
4
May, 2019
2
May, 2022
1
February, 2023
1
January, 2018
1
October, 2017
Available data
120
bam
97
bigWig
69
bed bed3+
69
bed narrowPeak
69
bigBed narrowPeak
68
bed broadPeak
68
bigBed broadPeak
37
tsv
21
tagAlign
fastq
6
bed bedMethyl
6
bigBed bedMethyl
3
hdf5
2
bedpe bed3+
2
hic
1
bed bed3
1
txt
Organism
151
Homo sapiens
Biosample type
133
tissue
18
primary cell
Organ
531
connective tissue
424
pancreas
416
adipose tissue
324
kidney
296
heart
268
liver
225
epithelium
161
vasculature
159
bone element
158
blood vessel
121
artery
88
brain
73
limb
61
musculature of body
58
eye
20
lung
19
nerve
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
151
AMP
Genome assembly (visualization)
83
GRCh38
83
hg19
Lab
151
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
audit script error
files.file_type!
fastq
target.investigated_as!
histone
BIOSAMPLE
ASSAY
151 results
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DNase-seq
ChIP-seq
total RNA-seq
Hi-C
small RNA-seq
RRBS
pCHi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
WGBS
snATAC-seq
tissue
muscle of arm
17
brain
12
1
1
1
1
muscle of leg
13
1
1
skeletal muscle tissue
3
1
1
2
1
1
1
frontal cortex
2
2
1
1
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primary cell
skeletal muscle cell
1
1
1
skeletal muscle satellite cell
1
1
1
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
+ See 4 more…
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