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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 200ChIP-seq
  • 30DNase-seq
  • 17total RNA-seq
  • 4small RNA-seq
  • 3ATAC-seq
  • 3Hi-C
  • 3single cell RNA-seq
  • 2RRBS
  • 2pCHi-C
  • 1FAIRE-seq
Assay category
  • 200DNA binding
  • 34DNA accessibility
  • 24Transcription
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 177histone
  • 177histone modification
  • 113narrow histone mark
  • 64broad histone mark
  • 26control
Date released
  • 86October, 2019
  • 82November, 2017
  • 30June, 2019
  • 28May, 2019
  • 18July, 2019
  • 12February, 2020
  • 6October, 2017
  • 2March, 2020
  • 1February, 2023
Available data
  • 243bam
  • 222bigWig
  • 203bed narrowPeak
  • 127bigBed narrowPeak
  • 118tagAlign
  • 47bed broadPeak
  • 38bigBed broadPeak
  • 35bed bed3+
  • 26tsv
  • fastq
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
  • 1tagAlign bed3+
Organism
  • 265Homo sapiens
Biosample type
  • 253tissue
  • 12primary cell
Organ
  • 583connective tissue
  • 475pancreas
  • 447adipose tissue
  • 393heart
  • 354kidney
  • 326liver
  • 267epithelium
  • 265brain
  • 230vasculature
  • 227blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 94musculature of body
  • 61eye
  • 43nerve
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 10embryo
  • 9blood
  • 9bodily fluid
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 265AMP
Genome assembly (visualization)
  • 202GRCh38
  • 147hg19
Lab
  • 265AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

265 results

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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain1112111
layer of hippocampus23
caudate nucleus1511
substantia nigra161
temporal lobe1511
primary cell
astrocyte of the cerebellum11
brain microvascular endothelial cell11
brain pericyte11
cerebellar granule cell2
choroid plexus epithelial cell11
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