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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 474total RNA-seq
  • 63ChIP-seq
  • 23ATAC-seq
  • 7DNase-seq
  • 4pCHi-C
  • 3WGBS
  • 3small RNA-seq
  • 2Capture-C
  • 1Hi-C
  • 1RNA microarray
  • 1RRBS
  • 1single cell RNA-seq
Assay category
  • 478Transcription
  • 63DNA binding
  • 30DNA accessibility
  • 4DNA methylation
  • 13D chromatin structure
Target of assay
  • 52histone
  • 52histone modification
  • 32broad histone mark
  • 20narrow histone mark
  • 10control
  • 1RNA binding protein
  • 1transcription factor
Date released
  • 455February, 2021
  • 53August, 2017
  • 18July, 2019
  • 18June, 2019
  • 14February, 2023
  • 6November, 2020
  • 5August, 2021
  • 4October, 2019
  • 2February, 2020
  • 2March, 2020
  • 2May, 2021
  • 1April, 2018
  • 1January, 2018
  • 1May, 2023
  • 1November, 2019
Available data
  • 593bam
  • 570bigWig
  • 478tsv
  • fastq
  • 75bed narrowPeak
  • 28bigBed narrowPeak
  • 27bed bed3+
  • 22tagAlign
  • 10bed broadPeak
  • 9bigBed broadPeak
  • 6bed bed3
  • 4bed bedgraph
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 1bedpe bed3+
  • 1hdf5
Organism
  • 582Homo sapiens
Biosample type
  • 504tissue
  • 42in vitro differentiated cells
  • 36primary cell
  • 1stem cell
Organ
  • 583connective tissue
  • 475pancreas
  • 447adipose tissue
  • 393heart
  • 354kidney
  • 326liver
  • 267epithelium
  • 265brain
  • 230vasculature
  • 227blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 94musculature of body
  • 61eye
  • 43nerve
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 10embryo
  • 9blood
  • 9bodily fluid
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 582AMP
  • 1T1D
Genome assembly (visualization)
  • 516hg19
  • 491GRCh38
Lab
  • 578AMP-T2D consortium
  • 4Struan F.A. Grant, CHOP
  • 1Kyle Gaulton, UCSD
Audit category:
  • 19inconsistent ontology term
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

583 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
WGBS
small RNA-seq
Capture-C
Hi-C
RNA microarray
RRBS
single cell RNA-seq
tissue
adipose tissue38231
bone tissue58
subcutaneous abdominal adipose tissue363
subcutaneous adipose tissue711
omental fat pad511
in vitro differentiated cells
adipocyte51481
chondrocyte5
immature adipocyte22
osteoblast11
preadipocyte11
primary cell
cardiac fibroblast531
osteoblast5211
mesenchymal stem cell7
brain pericyte11
mesenchymal stem cell of adipose11
stem cell
mesenchymal stem cell1
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