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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
total RNA-seq
28
ATAC-seq
6
pCHi-C
5
ChIP-seq
4
DNase-seq
1
RRBS
Assay category
32
DNA accessibility
29
Transcription
5
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
21
October, 2019
8
August, 2021
7
June, 2019
3
May, 2021
1
February, 2020
1
July, 2019
1
March, 2020
Available data
47
bed narrowPeak
43
bam
35
bigWig
fastq
20
tsv
7
bed bed3+
6
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
73
Homo sapiens
Biosample type
58
tissue
8
cell line
5
primary cell
2
in vitro differentiated cells
Organ
583
connective tissue
475
pancreas
adipose tissue
393
heart
354
kidney
326
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
72
AMP
1
T1D
Genome assembly (visualization)
44
hg19
16
GRCh38
Lab
72
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
files.file_type!
fastq
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
73 results
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total RNA-seq
ATAC-seq
pCHi-C
ChIP-seq
DNase-seq
RRBS
tissue
islet of Langerhans
14
1
4
2
retina
3
15
3
pigmented layer of retina
2
12
thymus
2
cell line
H1-hESC
8
primary cell
retinal pigment epithelial cell
3
1
1
in vitro differentiated cells
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
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