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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
10
total RNA-seq
2
DNase-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
Assay category
17
DNA binding
10
Transcription
3
DNA accessibility
2
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
21
October, 2019
8
August, 2021
3
May, 2021
2
March, 2020
Available data
56
bam
44
bigWig
27
bed narrowPeak
fastq
15
tsv
13
bigBed narrowPeak
5
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
Organism
34
Homo sapiens
Biosample type
22
primary cell
8
cell line
2
in vitro differentiated cells
2
tissue
Organ
583
connective tissue
475
pancreas
adipose tissue
393
heart
354
kidney
326
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
33
AMP
1
T1D
Genome assembly (visualization)
27
hg19
22
GRCh38
Lab
33
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
1
audit script error
files.file_type!
fastq
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
pCHi-C
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
2
1
cell line
H1-hESC
8
in vitro differentiated cells
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
tissue
thymus
2
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