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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 71ATAC-seq
  • 57ChIP-seq
  • 50total RNA-seq
  • 41WGBS
  • 19DNase-seq
  • 8Hi-C
  • 6MeRIP-seq
  • 6RRBS
  • 4single cell RNA-seq
  • 2Capture-C
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1FAIRE-seq
  • 1RNA microarray
Assay category
  • 91DNA accessibility
  • 57DNA binding
  • 54Transcription
  • 47DNA methylation
  • 83D chromatin structure
Target of assay
  • 42histone
  • 42histone modification
  • 21broad histone mark
  • 21narrow histone mark
  • 13control
  • 5transcription factor
  • 4RNA binding protein
  • 3nucleotide modification
Date released
  • 80May, 2022
  • 35October, 2019
  • 26February, 2021
  • 26May, 2021
  • 20June, 2019
  • 16November, 2019
  • 15February, 2023
  • 13July, 2019
  • 6August, 2021
  • 6December, 2019
  • 6March, 2020
  • 6November, 2020
  • 5May, 2019
  • 4April, 2018
  • 3October, 2022
Available data
  • 317bam
  • 301bigWig
  • fastq
  • 156tsv
  • 151bed narrowPeak
  • 80zippedFastqFolder
  • 76bigBed narrowPeak
  • 22bed broadPeak
  • 22bigBed broadPeak
  • 21bed bed3+
  • 7tagAlign
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6hic
  • 5bedpe bed3+
  • 3cool
  • 2hdf5
  • 1tar
Organism
  • 266Homo sapiens
Biosample type
  • 168primary cell
  • 79cell line
  • 15tissue
  • 5in vitro differentiated cells
Organ
  • 583connective tissue
  • 475pancreas
  • 447adipose tissue
  • 393heart
  • 354kidney
  • 326liver
  • 267epithelium
  • 265brain
  • 230vasculature
  • 227blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 95musculature of body
  • 61eye
  • 43nerve
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 10embryo
  • 9blood
  • 9bodily fluid
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 180AMP
  • 83HPAP
  • 4T1D
Genome assembly (visualization)
  • 138hg19
  • 113GRCh38
Lab
  • 178AMP-T2D consortium
  • 83Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 86inconsistent ontology term
  • 5audit script error
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

267 results

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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
WGBS
DNase-seq
Hi-C
MeRIP-seq
RRBS
single cell RNA-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
RNA microarray
primary cell
pancreatic alpha cell22251
pancreatic beta cell13161
endothelial cell of umbilical vein17221
epithelial cell of proximal tubule10111
hepatocyte4511
cell line
EndoC_BH11915331621
glomerular visceral epithelial cell11
tissue
pigmented layer of retina122
renal glomerulus1
in vitro differentiated cells
pancreatic PP cell3
endothelial cell1
intermediate endothelial cell1
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