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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
8
pCHi-C
5
ChIP-seq
4
DNase-seq
1
RRBS
Assay category
32
DNA accessibility
19
Transcription
5
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
21
October, 2019
7
June, 2019
3
March, 2020
1
February, 2020
1
July, 2019
1
May, 2021
Available data
47
bed narrowPeak
31
bam
fastq
22
bigWig
19
bigBed narrowPeak
8
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
Organism
65
Homo sapiens
Biosample type
60
tissue
5
primary cell
Organ
583
connective tissue
475
pancreas
447
adipose tissue
393
heart
354
kidney
326
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
64
AMP
1
T1D
Genome assembly (visualization)
34
hg19
6
GRCh38
Lab
64
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
65 results
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ATAC-seq
total RNA-seq
pCHi-C
ChIP-seq
DNase-seq
RRBS
tissue
islet of Langerhans
1
14
4
2
retina
15
3
3
pigmented layer of retina
12
2
thymus
2
bladder (urinary bladder)
1
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primary cell
retinal pigment epithelial cell
3
1
1
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