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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 184total RNA-seq
  • 100ChIP-seq
  • 22ATAC-seq
  • 3DNase-seq
  • 3Hi-C
  • 3WGBS
  • 3pCHi-C
  • 3small RNA-seq
  • 2STARR-seq
  • 1RRBS
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 188Transcription
  • 100DNA binding
  • 25DNA accessibility
  • 4DNA methylation
  • 33D chromatin structure
  • 1DNA sequencing
Target of assay
  • 58histone
  • 58histone modification
  • 41narrow histone mark
  • 31control
  • 17broad histone mark
  • 11transcription factor
  • 1RNA binding protein
Date released
  • 194May, 2020
  • 40May, 2022
  • 35August, 2021
  • 26August, 2017
  • 10July, 2019
  • 7October, 2019
  • 5December, 2019
  • 3February, 2021
  • 3March, 2020
  • 2June, 2019
  • 1February, 2020
Available data
  • 681bam
  • 622bigWig
  • fastq
  • 441bed narrowPeak
  • 358bigBed narrowPeak
  • 174tsv
  • 86tagAlign
  • 63bed broadPeak
  • 63bigBed broadPeak
  • 13bed bed3+
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 326Homo sapiens
Biosample type
  • 278tissue
  • 34cell line
  • 14primary cell
Organ
  • 583connective tissue
  • 475pancreas
  • 447adipose tissue
  • 393heart
  • 354kidney
  • 326liver
  • 267epithelium
  • 265brain
  • 230vasculature
  • 227blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 94musculature of body
  • 61eye
  • 43nerve
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 10embryo
  • 9blood
  • 9bodily fluid
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 326AMP
Genome assembly (visualization)
  • 235hg19
  • 188GRCh38
Lab
  • 255AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 31Bing Ren, UCSD
Audit category:
  • 1inconsistent ontology term
  • 1inconsistent replicate
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

326 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver167782012111
right lobe of liver3112
cell line
HepG291811221
primary cell
hepatocyte5411
Liver fetal (hepatocyte)1
endothelial cell of hepatic sinusoid1
hepatic stellate cell1
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