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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
5
total RNA-seq
2
ATAC-seq
2
DNase-seq
1
pCHi-C
Assay category
36
DNA binding
5
Transcription
4
DNA accessibility
Target of assay
25
histone
25
histone modification
16
broad histone mark
11
control
9
narrow histone mark
Date released
44
October, 2019
1
February, 2020
1
March, 2020
Available data
43
bam
32
bigWig
28
bed narrowPeak
26
bigBed narrowPeak
6
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
tagAlign
Organism
46
Homo sapiens
Biosample type
46
tissue
Organ
583
connective tissue
475
pancreas
447
adipose tissue
393
heart
354
kidney
326
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
46
AMP
Genome assembly (visualization)
32
GRCh38
32
hg19
Lab
46
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
46 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
tissue
tibial nerve
35
5
1
2
bladder (urinary bladder)
1
islet of Langerhans
1
pituitary gland
1
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