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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 219total RNA-seq
  • 96ATAC-seq
  • 71ChIP-seq
  • 41WGBS
  • 11snATAC-seq
  • 10MeRIP-seq
  • 9Hi-C
  • 5DNase-seq
  • 5single cell RNA-seq
  • 2Capture-C
  • 2RRBS
  • 2small RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1pCHi-C
Assay category
  • 226Transcription
  • 112DNA accessibility
  • 71DNA binding
  • 43DNA methylation
  • 93D chromatin structure
Target of assay
  • 51histone
  • 51histone modification
  • 26broad histone mark
  • 25narrow histone mark
  • 23control
  • 5nucleotide modification
  • 2transcription factor
  • 1RNA binding protein
Date released
  • 118July, 2018
  • 80May, 2022
  • 61May, 2021
  • 55November, 2019
  • 26February, 2021
  • 20August, 2017
  • 19February, 2023
  • 18October, 2019
  • 16October, 2018
  • 14March, 2020
  • 10November, 2020
  • 8January, 2021
  • 6July, 2019
  • 5April, 2018
  • 4August, 2021
  • 4June, 2019
  • 4March, 2019
  • 3October, 2022
  • 2May, 2019
  • 1August, 2022
  • 1February, 2020
Available data
  • 689bam
  • 623bigWig
  • fastq
  • 417tsv
  • 214bed narrowPeak
  • 91bigBed narrowPeak
  • 80zippedFastqFolder
  • 29bed bed3+
  • 21bed broadPeak
  • 19tagAlign
  • 7bedpe bed3+
  • 7bigBed broadPeak
  • 7hic
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6txt
  • 3cool
  • 1bedpe
  • 1hdf5
Organism
  • 474Homo sapiens
Biosample type
  • 292tissue
  • 92cell line
  • 88primary cell
  • 3in vitro differentiated cells
Organ
  • 583connective tissue
  • 475pancreas
  • 447adipose tissue
  • 393heart
  • 354kidney
  • 326liver
  • 267epithelium
  • 265brain
  • 230vasculature
  • 227blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 94musculature of body
  • 61eye
  • 43nerve
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 10embryo
  • 9blood
  • 9bodily fluid
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 358AMP
  • 83HPAP
  • 34T1D
Genome assembly (visualization)
  • 295hg19
  • 278GRCh38
Lab
  • 349AMP-T2D consortium
  • 83Klaus Kaestner, Upenn
  • 27Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 76inconsistent ontology term
  • 4audit script error
Audit category:
  • 1inconsistent assembly
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

475 results

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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
DNase-seq
single cell RNA-seq
Capture-C
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans18138227431
endocrine pancreas16
pancreas241211
body of pancreas3222
cell line
EndoC_BH13319156121
Panc11311
primary cell
pancreatic alpha cell22251
pancreatic beta cell13161
pancreatic acinar cell413
pancreatic ductal cell1
pancreatic stellate cell1
in vitro differentiated cells
pancreatic PP cell3
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