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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1227total RNA-seq
  • 232single cell RNA-seq
  • 86RNA microarray
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5STARR-seq
  • 3snDrop-seq
Assay category
  • 1477Transcription
Target of assay
  • 5control
  • 5nucleotide modification
Date released
  • 637February, 2021
  • 185August, 2021
  • 182May, 2021
  • 145May, 2020
  • 118July, 2018
  • 54May, 2022
  • 49July, 2019
  • 47September, 2023
  • 26October, 2019
  • 25February, 2020
  • 20November, 2019
  • 18February, 2023
  • 18September, 2020
  • 15March, 2020
  • 14November, 2020
  • 10December, 2019
  • 9April, 2020
  • 5April, 2018
  • 4May, 2023
Available data
  • 1478tsv
  • 1335bam
  • 1331bigWig
  • fastq
  • 156txt
  • 52zippedFastqFolder
  • 8csv
  • 2bed bed3+
Organism
  • 1581Homo sapiens
Biosample type
  • 1213tissue
  • 126primary cell
  • 123in vitro differentiated cells
  • 119cell line
Organ
  • 472connective tissue
  • 400adipose tissue
  • 236pancreas
  • 190liver
  • 162heart
  • 146bone element
  • 128kidney
  • 65blood vessel
  • 65vasculature
  • 56artery
  • 56epithelium
  • 21brain
  • 19eye
  • 10embryo
  • 9lung
  • 8musculature of body
  • 4skeleton
  • 3limb
  • 1nerve
  • 1spinal cord
Project
  • 1414AMP
  • 60T1D
  • 51HPAP
  • 47KPMP
  • 9LungMap
Genome assembly (visualization)
  • 1100hg19
  • 1098GRCh38
Lab
  • 1305AMP-T2D consortium
  • 64Kyle Gaulton, UCSD
  • 60Katalin Susztak, Upenn
  • 51Klaus Kaestner, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 15Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Xin Sun, UCSD
Audit category:
  • 219inconsistent ontology term
  • 9audit script error
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

1581 results

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Clear Filters
total RNA-seq
single cell RNA-seq
RNA microarray
small RNA-seq
MeRIP-seq
STARR-seq
snDrop-seq
tissue
adipose tissue382
islet of Langerhans1954
liver16711
kidney4964
bone element84
primary cell
monocyte52
Langerhans cell51
hepatocyte5
osteoblast4
pancreatic acinar cell3
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
neural progenitor cell7
adipocyte5
cell line
smooth muscle cell of the coronary artery52
EndoC_BH1336
HepG292
H1-hESC8
HEK293T2
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