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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1244total RNA-seq
  • 921ChIP-seq
  • 380ATAC-seq
  • 230single cell RNA-seq
  • 180DNase-seq
  • 87RNA microarray
  • 57WGBS
  • 50snATAC-seq
  • 35pCHi-C
  • 24Hi-C
  • 18small RNA-seq
  • 4Capture-C
  • 4MeRIP-seq
  • 3snDrop-seq
  • 2FAIRE-seq
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1496Transcription
  • 921DNA binding
  • 612DNA accessibility
  • 60DNA methylation
  • 243D chromatin structure
  • 1DNA sequencing
Target of assay
  • 721histone
  • 721histone modification
  • 373narrow histone mark
  • 348broad histone mark
  • 157control
  • 45transcription factor
  • 21RNA binding protein
  • 2nucleotide modification
Date released
  • 644February, 2021
  • 385May, 2021
  • 301August, 2021
  • 285May, 2020
  • 240October, 2019
  • 186June, 2019
  • 176May, 2022
  • 123August, 2017
  • 123February, 2023
  • 118July, 2018
  • 106May, 2019
  • 84July, 2019
  • 82November, 2017
  • 79April, 2019
  • 48March, 2020
  • 47September, 2023
  • 40May, 2024
  • 38November, 2019
  • 25February, 2020
  • 19April, 2020
  • 18September, 2020
  • 16October, 2018
  • 15May, 2023
  • 13January, 2021
  • 10November, 2020
  • 6October, 2017
  • 5April, 2018
  • 5March, 2023
  • 4March, 2019
  • 4October, 2022
  • 3December, 2019
  • 3January, 2018
  • 1August, 2022
Available data
  • 2716bam
  • 2558bigWig
  • 1531tsv
  • 1262bed narrowPeak
  • fastq
  • 553bigBed narrowPeak
  • 372tagAlign
  • 234bed bed3+
  • 223bed broadPeak
  • 186bigBed broadPeak
  • 158txt
  • 153zippedFastqFolder
  • 64xls
  • 19hic
  • 17bedpe bed3+
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11bed bed3
  • 8csv
  • 3cool
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3244Homo sapiens
Biosample type
  • 2332tissue
  • 536primary cell
  • 210in vitro differentiated cells
  • 168cell line
  • 6stem cell
Organ
  • 573connective tissue
  • 447adipose tissue
  • 426pancreas
  • 377heart
  • 315kidney
  • 305liver
  • 246brain
  • 205epithelium
  • 192blood vessel
  • 192vasculature
  • 158bone element
  • 134artery
  • 117limb
  • 83musculature of body
  • 57eye
  • 43nerve
  • 20lung
  • 18ureter
  • 16skeleton
  • 9blood
  • 9bodily fluid
  • 5gonad
  • 5ovary
  • 4vein
  • 2embryo
  • 2intestine
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 2805AMP
  • 221T1D
  • 155HPAP
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 2008GRCh38
  • 1999hg19
Lab
  • 2466AMP-T2D consortium
  • 300Kyle Gaulton, UCSD
  • 155Klaus Kaestner, Upenn
  • 138Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 32Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 259inconsistent ontology term
  • 13audit script error
files.file_type!
  • fastq
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

3252 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
Capture-C
MeRIP-seq
snDrop-seq
FAIRE-seq
HiChIP
RRBS
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
...and 6 more
tissue
adipose tissue38231
islet of Langerhans19543296434
liver166732012111
kidney4927756413211
bone element84
primary cell
monocyte548515
Langerhans cell5121
pancreatic alpha cell22251
CD8-positive, alpha-beta T cell43321
pancreatic beta cell13161
in vitro differentiated cells
cardiomyocytes593
embryonic stem cell53751
neural progenitor cell72110
adipocyte51441
induced pluripotent stem cell9
cell line
EndoC_BH13113171221
smooth muscle cell of the coronary artery5248
HepG29161
EndoC-BH1
Panc12
stem cell
SB Ad3.111
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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