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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 236ChIP-seq
  • 233total RNA-seq
  • 193ATAC-seq
  • 49pCHi-C
  • 45DNase-seq
  • 18Hi-C
  • 15RRBS
  • 12snATAC-seq
  • 11single cell RNA-seq
  • 11small RNA-seq
  • 10MeRIP-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3FAIRE-seq
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
  • 1WGBS
Assay category
  • 255Transcription
  • 253DNA accessibility
  • 236DNA binding
  • 183D chromatin structure
  • 17DNA methylation
Target of assay
  • 187histone
  • 187histone modification
  • 115narrow histone mark
  • 72broad histone mark
  • 30control
  • 27transcription factor
  • 10RNA binding protein
  • 7recombinant protein
  • 5nucleotide modification
Date released
  • 148May, 2021
  • 144May, 2020
  • 124October, 2019
  • 66August, 2021
  • 62June, 2019
  • 60July, 2019
  • 53February, 2023
  • 48March, 2020
  • 37February, 2021
  • 25February, 2020
  • 24November, 2019
  • 14May, 2019
  • 10November, 2020
  • 7December, 2019
  • 6October, 2017
  • 5January, 2021
  • 4March, 2019
  • 3April, 2018
  • 3October, 2022
  • 2April, 2019
  • 2May, 2022
  • 1August, 2017
  • 1March, 2023
Available data
  • 1159bam
  • 1078bigWig
  • 728bed narrowPeak
  • fastq
  • 529bigBed narrowPeak
  • 371tsv
  • 142tagAlign
  • 125bed broadPeak
  • 123bigBed broadPeak
  • 107bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 849Homo sapiens
Biosample type
  • 368primary cell
  • 266tissue
  • 147in vitro differentiated cells
  • 67cell line
  • 1stem cell
Organ
  • 93pancreas
  • 90brain
  • 85epithelium
  • 58kidney
  • 53connective tissue
  • 45vasculature
  • 42blood vessel
  • 41heart
  • 30liver
  • 20musculature of body
  • 19vein
  • 13adipose tissue
  • 11artery
  • 10embryo
  • 9bone element
  • 8limb
  • 8skeleton
  • 7eye
  • 2blood
  • 2bodily fluid
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 684AMP
  • 161T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 574hg19
  • 470GRCh38
Lab
  • 639AMP-T2D consortium
  • 173Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 3Klaus Kaestner, Upenn
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 130inconsistent ontology term
  • 6audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
files.file_type!
  • fastq
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

849 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
DNase-seq
Hi-C
RRBS
snATAC-seq
single cell RNA-seq
small RNA-seq
MeRIP-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
Capture-C
snDrop-seq
DNAme array
WGBS
primary cell
monocyte4726211
naive thymus-derived CD4-positive, alpha-beta T cell21221
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein16111
macrophage111
tissue
islet of Langerhans28352134
brain111121
heart534111
liver5311
kidney12141
in vitro differentiated cells
neural progenitor cell21710
embryonic stem cell11551
cardiac precursors (cardiac muscle cell)1911
cardiomyocytes12
adipocyte181
cell line
EndoC_BH122263
Panc11111
H1-hESC8
HepG22122
RCC 7860 HIF1a re-expression41
stem cell
mesenchymal stem cell1
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