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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 187total RNA-seq
  • 143ChIP-seq
  • 103ATAC-seq
  • 28pCHi-C
  • 25DNase-seq
  • 11small RNA-seq
  • 9Hi-C
  • 6single cell RNA-seq
  • 5snATAC-seq
  • 4MeRIP-seq
  • 2Capture-C
  • 2FAIRE-seq
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 204Transcription
  • 143DNA binding
  • 135DNA accessibility
  • 93D chromatin structure
  • 1DNA methylation
Target of assay
  • 121histone
  • 121histone modification
  • 84narrow histone mark
  • 37broad histone mark
  • 12control
  • 12transcription factor
  • 6RNA binding protein
  • 2nucleotide modification
Date released
  • 134May, 2021
  • 88May, 2020
  • 50October, 2019
  • 48August, 2021
  • 47February, 2023
  • 36July, 2019
  • 32March, 2020
  • 30June, 2019
  • 25February, 2020
  • 11February, 2021
  • 6October, 2017
  • 4March, 2019
  • 4November, 2020
  • 3April, 2018
  • 3October, 2022
  • 2January, 2021
  • 2May, 2022
  • 1April, 2019
  • 1March, 2023
  • 1November, 2019
Available data
  • 483bam
  • 467bigWig
  • 302tsv
  • 173bed narrowPeak
  • fastq
  • 116tagAlign
  • 68bed bed3+
  • 40bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 528Homo sapiens
Biosample type
  • 225primary cell
  • 198tissue
  • 104in vitro differentiated cells
  • 1stem cell
Organ
  • 71brain
  • 44pancreas
  • 43connective tissue
  • 25heart
  • 23epithelium
  • 19kidney
  • 13adipose tissue
  • 9liver
  • 9musculature of body
  • 8bone element
  • 8skeleton
  • 7blood vessel
  • 7vasculature
  • 4artery
  • 3eye
  • 3limb
  • 2blood
  • 2bodily fluid
  • 2embryo
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 386AMP
  • 138T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 368hg19
  • 302GRCh38
Lab
  • 356AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 47inconsistent ontology term
  • 4audit script error
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

528 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
DNase-seq
small RNA-seq
Hi-C
single cell RNA-seq
snATAC-seq
MeRIP-seq
Capture-C
FAIRE-seq
snDrop-seq
DNAme array
primary cell
monocyte264721
mesenchymal stem cell7
CD8-positive, alpha-beta T cell221
B cell22
T follicular helper cell22
tissue
islet of Langerhans8216224
brain612
heart24111
frontal cortex2211
cerebellum (Hemisphere)1111
in vitro differentiated cells
neural progenitor cell72110
embryonic stem cell51141
cardiomyocytes12
induced pluripotent stem cell9
adipocyte141
stem cell
mesenchymal stem cell1
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