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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 93ChIP-seq
  • 90ATAC-seq
  • 46total RNA-seq
  • 21pCHi-C
  • 20DNase-seq
  • 15RRBS
  • 9Hi-C
  • 7snATAC-seq
  • 6MeRIP-seq
  • 5single cell RNA-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 1FAIRE-seq
  • 1WGBS
Assay category
  • 118DNA accessibility
  • 93DNA binding
  • 51Transcription
  • 16DNA methylation
  • 93D chromatin structure
Target of assay
  • 66histone
  • 66histone modification
  • 35broad histone mark
  • 31narrow histone mark
  • 18control
  • 15transcription factor
  • 7recombinant protein
  • 4RNA binding protein
  • 3nucleotide modification
Date released
  • 74October, 2019
  • 56May, 2020
  • 32June, 2019
  • 26February, 2021
  • 24July, 2019
  • 23November, 2019
  • 18August, 2021
  • 16March, 2020
  • 14May, 2019
  • 14May, 2021
  • 7December, 2019
  • 6February, 2023
  • 6November, 2020
  • 3January, 2021
  • 1April, 2019
  • 1August, 2017
Available data
  • 676bam
  • 611bigWig
  • 555bed narrowPeak
  • fastq
  • 489bigBed narrowPeak
  • 99bed broadPeak
  • 99bigBed broadPeak
  • 69tsv
  • 39bed bed3+
  • 26tagAlign
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 4tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 321Homo sapiens
Biosample type
  • 143primary cell
  • 68tissue
  • 67cell line
  • 43in vitro differentiated cells
Organ
  • 62epithelium
  • 49pancreas
  • 39kidney
  • 38vasculature
  • 35blood vessel
  • 21liver
  • 19brain
  • 18vein
  • 16heart
  • 11musculature of body
  • 10connective tissue
  • 8embryo
  • 7artery
  • 5limb
  • 4eye
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 298AMP
  • 23T1D
Genome assembly (visualization)
  • 206hg19
  • 168GRCh38
Lab
  • 283AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
  • 6Bing Ren, UCSD
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Katalin Susztak, Upenn
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 83inconsistent ontology term
  • 2audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

321 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
DNase-seq
RRBS
Hi-C
snATAC-seq
MeRIP-seq
single cell RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
WGBS
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
endothelial cell of umbilical vein1611
macrophage11
skeletal muscle satellite cell8
tissue
islet of Langerhans1911
brain511
thoracic aorta7
heart51
liver51
cell line
EndoC_BH122263
Panc11111
H1-hESC8
HepG22122
RCC 7860 HIF1a re-expression41
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1191
cardiomyocytes (cardiac muscle cell)12122
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
adipocyte4
lymphocyte of B lineage (iPSC)111
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