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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1057total RNA-seq
  • 778ChIP-seq
  • 277ATAC-seq
  • 224single cell RNA-seq
  • 155DNase-seq
  • 87RNA microarray
  • 57WGBS
  • 45snATAC-seq
  • 15Hi-C
  • 7pCHi-C
  • 7small RNA-seq
  • 2Capture-C
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snDrop-seq
  • 1whole genome sequencing assay
Assay category
  • 1292Transcription
  • 778DNA binding
  • 477DNA accessibility
  • 59DNA methylation
  • 153D chromatin structure
  • 1DNA sequencing
Target of assay
  • 600histone
  • 600histone modification
  • 311broad histone mark
  • 289narrow histone mark
  • 145control
  • 33transcription factor
  • 15RNA binding protein
Date released
  • 633February, 2021
  • 253August, 2021
  • 251May, 2021
  • 197May, 2020
  • 190October, 2019
  • 174May, 2022
  • 156June, 2019
  • 123August, 2017
  • 118July, 2018
  • 106May, 2019
  • 82November, 2017
  • 78April, 2019
  • 76February, 2023
  • 48July, 2019
  • 47September, 2023
  • 40May, 2024
  • 37November, 2019
  • 19April, 2020
  • 18September, 2020
  • 16March, 2020
  • 16October, 2018
  • 15May, 2023
  • 11January, 2021
  • 6November, 2020
  • 4March, 2023
  • 3December, 2019
  • 3January, 2018
  • 2April, 2018
  • 1August, 2022
  • 1October, 2022
Available data
  • 2233bam
  • 2091bigWig
  • 1229tsv
  • 1089bed narrowPeak
  • fastq
  • 513bigBed narrowPeak
  • 256tagAlign
  • 197bed broadPeak
  • 166bed bed3+
  • 162bigBed broadPeak
  • 153txt
  • 153zippedFastqFolder
  • 64xls
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1vcf
Organism
  • 2716Homo sapiens
Biosample type
  • 2134tissue
  • 311primary cell
  • 168cell line
  • 106in vitro differentiated cells
  • 5stem cell
Organ
  • 530connective tissue
  • 434adipose tissue
  • 382pancreas
  • 352heart
  • 296kidney
  • 296liver
  • 185blood vessel
  • 185vasculature
  • 182epithelium
  • 175brain
  • 150bone element
  • 130artery
  • 114limb
  • 74musculature of body
  • 54eye
  • 42nerve
  • 19lung
  • 18ureter
  • 8skeleton
  • 7blood
  • 7bodily fluid
  • 4gonad
  • 4ovary
  • 3vein
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
Project
  • 2419AMP
  • 152HPAP
  • 83T1D
  • 47KPMP
  • 19LungMap
  • 4community
Genome assembly (visualization)
  • 1706GRCh38
  • 1631hg19
Lab
  • 2110AMP-T2D consortium
  • 152Klaus Kaestner, Upenn
  • 146Kyle Gaulton, UCSD
  • 138Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 28Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 212inconsistent ontology term
  • 9audit script error
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

2724 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
Hi-C
pCHi-C
small RNA-seq
Capture-C
HiChIP
RRBS
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
MPRA
STARR-seq
shRNA RNA-seq
...and 3 more
tissue
adipose tissue3821
liver1647320211
islet of Langerhans1874113414
kidney492675641121
bone element84
primary cell
monocyte283813
Langerhans cell5121
pancreatic alpha cell2225
CD8-positive, alpha-beta T cell233
pancreatic beta cell1316
cell line
EndoC_BH13113171221
smooth muscle cell of the coronary artery5248
HepG29161
EndoC-BH11
Panc12
in vitro differentiated cells
cardiomyocytes473
embryonic stem cell261
adipocyte414
chondrocyte5
pancreatic PP cell3
stem cell
SB Ad3.111
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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