Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 787ChIP-seq
Assay category
  • 787DNA binding
Target of assay
  • 787histone
  • 787histone modification
  • 404narrow histone mark
  • 383broad histone mark
  • 175control
  • 60transcription factor
  • 25RNA binding protein
  • 7recombinant protein
  • 5nucleotide modification
Date released
  • 196October, 2019
  • 140May, 2021
  • 96August, 2017
  • 92May, 2019
  • 70November, 2017
  • 60April, 2019
  • 35May, 2024
  • 27May, 2020
  • 20August, 2021
  • 19June, 2019
  • 14October, 2018
  • 10November, 2019
  • 5October, 2017
  • 3March, 2020
Available data
  • 868bigWig
  • 850bed narrowPeak
  • 784bam
  • 391bigBed narrowPeak
  • 321tagAlign
  • fastq
  • 65bed broadPeak
  • 30bigBed broadPeak
  • 25bed bed3+
  • 1tagAlign bed3+
Organism
  • 787Homo sapiens
Biosample type
  • 554tissue
  • 164primary cell
  • 47in vitro differentiated cells
  • 22cell line
Organ
  • 177brain
  • 97heart
  • 69blood vessel
  • 69vasculature
  • 58liver
  • 52connective tissue
  • 51pancreas
  • 49limb
  • 42epithelium
  • 33musculature of body
  • 31adipose tissue
  • 30kidney
  • 24nerve
  • 20artery
  • 15vein
  • 4gonad
  • 4ovary
  • 3eye
  • 1lymph node
  • 1pituitary gland
Project
  • 699AMP
  • 88T1D
Genome assembly (visualization)
  • 578GRCh38
  • 556hg19
Lab
  • 615AMP-T2D consortium
  • 134Kyle Gaulton, UCSD
  • 35Patrick T. Ellinor, Broad
  • 3Bing Ren, UCSD
Audit category:
  • 31inconsistent ontology term
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

787 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
tissue
liver52
islet of Langerhans37
left cardiac atrium35
subcutaneous abdominal adipose tissue31
heart left ventricle24
primary cell
monocyte85
CD8-positive, alpha-beta T cell30
endothelial cell of umbilical vein15
epithelial cell of proximal tubule7
skeletal muscle satellite cell7
in vitro differentiated cells
embryonic stem cell20
neural progenitor cell14
adipocyte12
pancreatic PP cell1
cell line
EndoC_BH112
Panc17
HepG23
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego