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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
532
ChIP-seq
196
total RNA-seq
42
DNase-seq
31
ATAC-seq
7
Hi-C
6
WGBS
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
532
DNA binding
200
Transcription
73
DNA accessibility
8
DNA methylation
7
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
97
control
94
histone modification
93
histone
82
recombinant protein
58
RNA binding protein
58
broad histone mark
35
narrow histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
303
November, 2017
144
May, 2020
76
October, 2019
63
December, 2017
53
November, 2018
40
May, 2022
34
August, 2017
34
June, 2019
31
August, 2021
14
July, 2019
9
February, 2021
7
May, 2019
5
December, 2019
5
January, 2019
4
February, 2020
3
March, 2020
1
December, 2018
Available data
795
bam
713
bigWig
533
bed narrowPeak
465
fastq
442
bigBed narrowPeak
181
tsv
99
bed broadPeak
99
bigBed broadPeak
tagAlign
49
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
hdf5
1
vcf
Organism
826
Homo sapiens
Biosample type
413
tissue
389
cell line
15
in vitro differentiated cells
9
primary cell
Organ
923
pancreas
704
liver
660
connective tissue
512
epithelium
482
adipose tissue
387
heart
354
kidney
228
vasculature
222
blood vessel
165
brain
159
bone element
135
artery
122
limb
81
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
826
AMP
Genome assembly (visualization)
678
hg19
596
GRCh38
Lab
755
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
2
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
16
inconsistent control read length
8
inconsistent control run_type
files.file_type!
hdf5
tagAlign
month_released!
August, 2018
BIOSAMPLE
ASSAY
826 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
75
167
2
20
1
3
1
1
1
1
tibial nerve
35
5
2
1
tibial artery
23
1
2
1
muscle of leg
7
13
1
right lobe of liver
10
3
2
1
1
2
+ See 11 more…
cell line
HepG2
366
14
1
2
1
2
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
See all biosamples
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