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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
481
ChIP-seq
188
total RNA-seq
22
ATAC-seq
6
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
481
DNA binding
192
Transcription
28
DNA accessibility
7
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
302
transcription factor
95
control
82
recombinant protein
81
histone modification
80
histone
53
RNA binding protein
51
narrow histone mark
29
broad histone mark
20
chromatin remodeller
2
other context
2
other post-translational modification
Date released
312
November, 2017
194
May, 2020
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
35
August, 2021
9
July, 2019
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
611
bam
566
bigWig
402
fastq
385
bed narrowPeak
308
bigBed narrowPeak
173
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
hdf5
1
vcf
Organism
717
Homo sapiens
Biosample type
398
cell line
307
tissue
12
primary cell
Organ
928
pancreas
717
liver
679
connective tissue
490
adipose tissue
468
epithelium
385
heart
324
kidney
197
brain
187
vasculature
181
blood vessel
159
bone element
115
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
25
spleen
24
embryo
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
717
AMP
Genome assembly (visualization)
564
hg19
474
GRCh38
Lab
646
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
hdf5
tar
month_released!
December, 2017
October, 2019
BIOSAMPLE
ASSAY
717 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
375
14
1
1
2
2
2
1
tissue
liver
102
166
20
2
3
1
1
1
1
1
right lobe of liver
3
1
2
1
2
primary cell
hepatocyte
4
5
1
1
hepatic stellate cell
1
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