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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
564
ChIP-seq
188
total RNA-seq
23
ATAC-seq
7
DNase-seq
7
WGBS
4
pCHi-C
3
Hi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
564
DNA binding
192
Transcription
30
DNA accessibility
9
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
341
transcription factor
116
control
104
histone modification
103
histone
82
recombinant protein
60
narrow histone mark
57
RNA binding protein
43
broad histone mark
23
chromatin remodeller
5
other context
5
other post-translational modification
Date released
312
November, 2017
194
May, 2020
63
December, 2017
62
November, 2018
54
August, 2017
40
May, 2022
35
August, 2021
12
January, 2019
9
July, 2019
8
December, 2018
October, 2019
5
December, 2019
4
March, 2020
3
February, 2021
2
June, 2019
1
February, 2020
1
October, 2017
Available data
698
bam
632
bigWig
489
fastq
449
bed narrowPeak
371
bigBed narrowPeak
174
tsv
86
tagAlign
64
bed broadPeak
64
bigBed broadPeak
14
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
hdf5
1
vcf
Organism
805
Homo sapiens
Biosample type
398
cell line
380
tissue
15
in vitro differentiated cells
12
primary cell
Organ
928
pancreas
780
liver
679
connective tissue
490
adipose tissue
487
epithelium
385
heart
324
kidney
197
brain
187
vasculature
181
blood vessel
159
bone element
115
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
805
AMP
Genome assembly (visualization)
628
hg19
540
GRCh38
Lab
734
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
hdf5
tar
month_released!
October, 2019
BIOSAMPLE
ASSAY
805 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
375
14
1
1
2
2
2
1
tissue
liver
140
166
20
2
3
1
1
1
1
1
spleen
20
1
1
2
1
right lobe of liver
10
3
1
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
hepatic stellate cell
1
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