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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ATAC-seq
21
ChIP-seq
9
DNase-seq
3
Hi-C
2
WGBS
1
FAIRE-seq
Assay category
56
DNA accessibility
21
DNA binding
3
3D chromatin structure
2
DNA methylation
Target of assay
70
histone
histone modification
45
broad histone mark
25
narrow histone mark
21
control
transcription factor
4
RNA binding protein
Date released
35
February, 2023
14
October, 2019
11
May, 2019
10
February, 2021
5
June, 2019
4
July, 2019
2
March, 2020
1
November, 2017
Available data
102
bam
75
bigWig
tsv
56
bed narrowPeak
11
bed bed3+
10
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
3
hic
2
bedpe bed3+
hdf5
2
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
fastq
1
tar
Organism
82
Homo sapiens
Biosample type
62
tissue
10
cell line
10
primary cell
Organ
358
pancreas
290
kidney
264
epithelium
175
liver
111
heart
101
bone element
87
connective tissue
86
vasculature
82
blood vessel
67
brain
66
limb
58
artery
54
musculature of body
52
eye
41
adipose tissue
19
lung
18
ureter
17
blood
17
bodily fluid
16
skeleton
14
nerve
12
spleen
8
embryo
7
vein
1
bone marrow
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
82
AMP
Genome assembly (visualization)
56
GRCh38
24
hg19
Lab
82
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
hdf5
tsv
target.investigated_as!
histone modification
transcription factor
BIOSAMPLE
ASSAY
82 results
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Clear Filters
ATAC-seq
ChIP-seq
DNase-seq
Hi-C
WGBS
FAIRE-seq
tissue
coronary artery
36
2
2
tibial artery
1
5
2
aorta
2
1
2
thoracic aorta
1
4
ascending aorta
3
1
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
2
2
2
1
brain microvascular endothelial cell
1
1
kidney capillary endothelial cell
1
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