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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
32
DNase-seq
16
total RNA-seq
4
pCHi-C
4
small RNA-seq
3
ATAC-seq
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
134
DNA binding
36
DNA accessibility
23
Transcription
2
DNA methylation
Target of assay
110
histone
110
histone modification
67
broad histone mark
43
narrow histone mark
24
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
15
July, 2019
12
February, 2020
3
March, 2020
2
November, 2018
1
February, 2023
1
May, 2021
Available data
160
bam
146
bigWig
128
bed narrowPeak
127
bigBed narrowPeak
80
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
199
Homo sapiens
Biosample type
181
tissue
18
primary cell
Organ
928
pancreas
783
liver
679
connective tissue
490
adipose tissue
487
epithelium
385
heart
324
kidney
197
brain
187
vasculature
181
blood vessel
159
bone element
115
artery
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
198
AMP
1
T1D
Genome assembly (visualization)
139
GRCh38
83
hg19
Lab
198
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
hdf5
month_released!
October, 2019
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
199 results
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ChIP-seq
DNase-seq
total RNA-seq
pCHi-C
small RNA-seq
ATAC-seq
single cell RNA-seq
RRBS
FAIRE-seq
tissue
brain
15
14
1
1
layer of hippocampus
22
caudate nucleus
15
1
1
temporal lobe
15
1
1
substantia nigra
15
1
+ See 24 more…
primary cell
choroid plexus epithelial cell
3
1
1
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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