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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1805
ChIP-seq
1520
total RNA-seq
523
ATAC-seq
369
single cell RNA-seq
176
DNase-seq
87
RNA microarray
85
snATAC-seq
74
WGBS
57
pCHi-C
25
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1911
Transcription
1805
DNA binding
789
DNA accessibility
96
DNA methylation
25
3D chromatin structure
1
DNA sequencing
Target of assay
968
histone modification
967
histone
514
transcription factor
499
narrow histone mark
467
broad histone mark
326
control
114
RNA binding protein
89
recombinant protein
36
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
709
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
244
October, 2019
205
February, 2023
200
May, 2022
186
June, 2019
168
July, 2018
113
May, 2019
99
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
July, 2025
Available data
3278
bam
3078
bigWig
1725
bed narrowPeak
1594
tsv
1352
fastq
958
bigBed narrowPeak
398
tagAlign
286
bed broadPeak
249
bigBed broadPeak
238
bed bed3+
161
txt
112
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tbi
1
vcf
Organism
4789
Homo sapiens
Biosample type
2656
tissue
1084
primary cell
661
cell line
394
in vitro differentiated cells
10
stem cell
Organ
945
pancreas
790
liver
683
connective tissue
491
adipose tissue
475
epithelium
393
heart
354
kidney
283
brain
234
vasculature
228
blood vessel
159
bone element
141
artery
limb
97
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
4166
AMP
324
HPAP
244
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
3112
hg19
3031
GRCh38
5
hg18
Lab
3785
AMP-T2D consortium
343
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
2
Stephen Parker, UMich
1
ITG
1
Maike Sander, UCSD
Audit category:
352
inconsistent ontology term
42
audit script error
28
inconsistent control
1
inconsistent replicate
Audit category:
89
missing controlled_by
Audit category:
56
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
files.file_type!
hdf5
organ_slims!
limb
BIOSAMPLE
ASSAY
4805 results
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table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
MeRIP-seq
FAIRE-seq
GRO-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
...and 8 more
tissue
islet of Langerhans
70
292
68
6
1
7
4
3
1
4
1
adipose tissue
2
382
3
3
1
liver
145
167
20
1
2
3
1
1
1
1
kidney
27
49
75
64
13