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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 99ChIP-seq
  • 61total RNA-seq
  • 46ATAC-seq
  • 9DNase-seq
  • 6single cell RNA-seq
  • 3Hi-C
  • 2WGBS
  • 1FAIRE-seq
  • 1pCHi-C
Assay category
  • 99DNA binding
  • 67Transcription
  • 56DNA accessibility
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 70histone
  • 70histone modification
  • 45broad histone mark
  • 25narrow histone mark
  • 21control
  • 8transcription factor
  • 4RNA binding protein
Date released
  • 66February, 2021
  • 50May, 2019
  • 47October, 2019
  • 35February, 2023
  • 9July, 2019
  • 6August, 2021
  • 5June, 2019
  • 4March, 2020
  • 3February, 2020
  • 3November, 2017
Available data
  • 180bam
  • 150bigWig
  • 129bed narrowPeak
  • 79bigBed narrowPeak
  • 68tsv
  • 13bed broadPeak
  • 13bigBed broadPeak
  • 11bed bed3+
  • 6tagAlign
  • 3fastq
  • 3hic
  • 2bedpe bed3+
  • hdf5
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1tar
Organism
  • 228Homo sapiens
Biosample type
  • 133tissue
  • 66cell line
  • 29primary cell
Organ
  • 945pancreas
  • 790liver
  • 683connective tissue
  • 522epithelium
  • 491adipose tissue
  • 393heart
  • 354kidney
  • 283brain
  • 234vasculature
  • 228blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 228AMP
Genome assembly (visualization)
  • 187GRCh38
  • 157hg19
Lab
  • 228AMP-T2D consortium
Audit category:
  • 1audit script error
files.file_type!
  • hdf5
BIOSAMPLE
ASSAY

228 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
pCHi-C
tissue
coronary artery51362
tibial artery23112
aorta1314121
ascending aorta1621
thoracic aorta1621
cell line
smooth muscle cell of the coronary artery6528
primary cell
endothelial cell of umbilical vein17221
brain microvascular endothelial cell31
endothelial cell of coronary artery1
kidney capillary endothelial cell1
smooth muscle cell of the coronary artery1
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