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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
6
ATAC-seq
4
ChIP-seq
2
pCHi-C
Assay category
62
Transcription
6
DNA accessibility
4
DNA binding
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
144
February, 2021
8
February, 2023
4
October, 2019
1
March, 2020
1
May, 2021
Available data
88
txt
60
bam
59
tsv
58
bigWig
4
bed bed3
2
bed narrowPeak
Organism
158
Homo sapiens
Biosample type
157
tissue
1
primary cell
Organ
867
pancreas
748
liver
639
connective tissue
478
epithelium
471
adipose tissue
339
kidney
336
heart
213
brain
189
vasculature
183
blood vessel
159
bone element
127
artery
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
157
AMP
1
T1D
Genome assembly (visualization)
64
hg19
60
GRCh38
Lab
157
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
files.file_type!
hdf5
organ_slims!
limb
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
158 results
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RNA microarray
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
bone element
84
bone tissue
58
islet of Langerhans
4
acetabular part of hip bone
1
1
ilium
1
1
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primary cell
megakaryocyte
1
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