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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
277
ChIP-seq
36
DNase-seq
23
total RNA-seq
12
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
277
DNA binding
49
DNA accessibility
30
Transcription
2
DNA methylation
Target of assay
230
histone
230
histone modification
130
narrow histone mark
100
broad histone mark
47
control
3
RNA binding protein
3
transcription factor
Date released
155
October, 2019
91
November, 2017
30
June, 2019
28
May, 2019
16
October, 2017
15
July, 2019
14
February, 2020
6
February, 2021
2
March, 2020
2
November, 2018
1
February, 2023
Available data
317
bam
274
bigWig
257
bed narrowPeak
173
bigBed narrowPeak
118
tagAlign
51
bed broadPeak
42
bigBed broadPeak
39
bed bed3+
32
tsv
21
fastq
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
360
Homo sapiens
Biosample type
342
tissue
18
primary cell
Organ
945
pancreas
790
liver
683
connective tissue
522
epithelium
491
adipose tissue
393
heart
354
kidney
283
brain
234
vasculature
228
blood vessel
159
bone element
141
artery
122
limb
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
360
AMP
Genome assembly (visualization)
275
GRCh38
219
hg19
Lab
360
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
hdf5
organ_slims!
mammary gland
musculature of body
BIOSAMPLE
ASSAY
360 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
tibial nerve
35
2
5
1
brain
20
14
1
1
1
tibial artery
23
2
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
+ See 85 more…
primary cell
choroid plexus epithelial cell
3
1
1
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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