Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 102ChIP-seq
  • 61total RNA-seq
  • 46ATAC-seq
  • 11DNase-seq
  • 6single cell RNA-seq
  • 3Hi-C
  • 2WGBS
  • 1FAIRE-seq
  • 1RRBS
  • 1pCHi-C
Assay category
  • 102DNA binding
  • 67Transcription
  • 58DNA accessibility
  • 33D chromatin structure
  • 3DNA methylation
Target of assay
  • 71histone
  • 71histone modification
  • 45broad histone mark
  • 26narrow histone mark
  • 22control
  • 9transcription factor
  • 5RNA binding protein
Date released
  • 66February, 2021
  • 50May, 2019
  • 47October, 2019
  • 35February, 2023
  • 10July, 2019
  • 7June, 2019
  • 6August, 2021
  • 6November, 2017
  • 4March, 2020
  • 3February, 2020
Available data
  • 185bam
  • 155bigWig
  • 133bed narrowPeak
  • 83bigBed narrowPeak
  • 68tsv
  • 17bed broadPeak
  • 17bigBed broadPeak
  • 13bed bed3+
  • 6fastq
  • 6tagAlign
  • 3hic
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • hdf5
  • 1tar
Organism
  • 234Homo sapiens
Biosample type
  • 133tissue
  • 66cell line
  • 35primary cell
Organ
  • 945pancreas
  • 790liver
  • 683connective tissue
  • 522epithelium
  • 491adipose tissue
  • 393heart
  • 354kidney
  • 283brain
  • 234vasculature
  • 228blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 234AMP
Genome assembly (visualization)
  • 191GRCh38
  • 163hg19
Lab
  • 234AMP-T2D consortium
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
files.file_type!
  • hdf5
BIOSAMPLE
ASSAY

234 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
RRBS
pCHi-C
tissue
coronary artery51362
tibial artery23112
aorta1314121
ascending aorta1621
thoracic aorta1621
cell line
smooth muscle cell of the coronary artery6528
primary cell
endothelial cell of umbilical vein17221
choroid plexus epithelial cell311
brain microvascular endothelial cell31
endothelial cell of coronary artery1
kidney capillary endothelial cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego