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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 755ChIP-seq
  • 241total RNA-seq
  • 195ATAC-seq
  • 95single cell RNA-seq
  • 49DNase-seq
  • 49pCHi-C
  • 19RRBS
  • 14Hi-C
  • 12snATAC-seq
  • 11small RNA-seq
  • 10MeRIP-seq
  • 8WGBS
  • 4FAIRE-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 755DNA binding
  • 347Transcription
  • 260DNA accessibility
  • 28DNA methylation
  • 143D chromatin structure
Target of assay
  • 420transcription factor
  • 261histone
  • 261histone modification
  • 153narrow histone mark
  • 108broad histone mark
  • 88recombinant protein
  • 82RNA binding protein
  • 77control
  • 32chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 148May, 2021
  • 144May, 2020
  • 123October, 2019
  • 66August, 2021
  • 64November, 2018
  • 62December, 2017
  • 62June, 2019
  • 56August, 2017
  • 56July, 2019
  • 53February, 2023
  • 48March, 2020
  • 45July, 2018
  • 43February, 2021
  • 39April, 2018
  • 28December, 2018
  • 25February, 2020
  • 24November, 2019
  • 21January, 2019
  • 14May, 2019
  • 10November, 2020
  • 8October, 2018
  • 7December, 2019
  • 7October, 2017
  • 5January, 2021
  • 5March, 2019
  • 3August, 2018
  • 3October, 2022
  • 2April, 2019
  • 2May, 2022
  • 2September, 2017
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 1159bam
  • 1078bigWig
  • 728bed narrowPeak
  • 630fastq
  • 529bigBed narrowPeak
  • 371tsv
  • 142tagAlign
  • 125bed broadPeak
  • 123bigBed broadPeak
  • 107bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • hdf5
  • 4tar
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1474Homo sapiens
Biosample type
  • 472primary cell
  • 462cell line
  • 353tissue
  • 183in vitro differentiated cells
  • 4stem cell
Organ
  • 425liver
  • 200pancreas
  • 167epithelium
  • 93brain
  • 67connective tissue
  • 58blood
  • 58bodily fluid
  • 58kidney
  • 47vasculature
  • 42blood vessel
  • 41heart
  • 22musculature of body
  • 19vein
  • 17adipose tissue
  • 13embryo
  • 11artery
  • 9bone element
  • 8limb
  • 8skeleton
  • 7eye
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 1303AMP
  • 161T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 1153hg19
  • 1003GRCh38
Lab
  • 1256AMP-T2D consortium
  • 173Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Klaus Kaestner, Upenn
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 134inconsistent ontology term
  • 28inconsistent control
  • 6audit script error
  • 1inconsistent replicate
Audit category:
  • 26missing controlled_by
Audit category:
  • 38inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
files.file_type!
  • hdf5
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1474 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
RRBS
Hi-C
snATAC-seq
small RNA-seq
MeRIP-seq
WGBS
FAIRE-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
snDrop-seq
DNAme array
primary cell
monocyte4726211
naive thymus-derived CD4-positive, alpha-beta T cell21221
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein16111
skeletal muscle myoblast15121
cell line
HepG2335512112
GM1287856
EndoC_BH122263
Panc1111
H1-hESC8
tissue
islet of Langerhans221037611234
liver4231111
brain111121
heart531411
kidney12141
in vitro differentiated cells
neural progenitor cell21710
embryonic stem cell11551
cardiac precursors (cardiac muscle cell)1911
adipocyte71811
hepatocyte15
stem cell
hESC3
mesenchymal stem cell1
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