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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
total RNA-seq
154
ChIP-seq
80
ATAC-seq
66
snATAC-seq
47
WGBS
45
single cell RNA-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
236
Transcription
154
DNA binding
146
DNA accessibility
47
DNA methylation
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
235
May, 2021
158
May, 2022
99
February, 2023
September, 2020
45
February, 2021
45
May, 2020
16
January, 2021
7
August, 2020
Available data
227
bigWig
204
bam
152
fastq
134
zippedFastqFolder
132
bed narrowPeak
102
tsv
84
tagAlign
6
txt
3
bedpe bed3+
3
cool
hic
2
bed bed3+
Organism
605
Homo sapiens
Biosample type
501
primary cell
52
tissue
47
in vitro differentiated cells
5
cell line
Organ
181
pancreas
130
epithelium
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
262
HPAP
236
T1D
107
AMP
Genome assembly (visualization)
238
hg19
187
GRCh38
Lab
3835
AMP-T2D consortium
343
Kyle Gaulton, UCSD
262
Klaus Kaestner, Upenn
141
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
36
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
audit script error
5
inconsistent ontology term
files.file_type!
hic
month_released!
September, 2020
organ_slims!
eye
BIOSAMPLE
ASSAY
605 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
single cell RNA-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
84
1
Langerhans cell
48
45
pancreatic alpha cell
27
27
31
pancreatic beta cell
10
15
16
exocrine cell
39
+ See 36 more…
tissue
islet of Langerhans
11
29
6
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
37
5
cell line
EndoC_BH1
3
2
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