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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
44
ATAC-seq
11
ChIP-seq
2
single cell RNA-seq
Assay category
58
Transcription
44
DNA accessibility
11
DNA binding
Target of assay
5
transcription factor
4
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
June, 2019
Available data
74
bam
62
bigWig
58
tsv
51
bed narrowPeak
6
tagAlign
3
bigBed narrowPeak
Organism
113
Homo sapiens
Biosample type
66
cell line
45
tissue
2
primary cell
Organ
917
pancreas
780
liver
662
connective tissue
489
adipose tissue
464
epithelium
291
heart
219
kidney
180
vasculature
176
blood vessel
170
brain
159
bone element
113
artery
69
blood
69
bodily fluid
51
musculature of body
37
embryo
33
eye
25
spleen
21
limb
20
lung
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
113
AMP
Genome assembly (visualization)
105
GRCh38
70
hg19
Lab
113
AMP-T2D consortium
files.file_type!
hic
month_released!
April, 2019
June, 2019
October, 2019
BIOSAMPLE
ASSAY
113 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
5
pulmonary artery
2
tibial artery
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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