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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
24
ChIP-seq
20
DNase-seq
6
ATAC-seq
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
26
DNA accessibility
24
DNA binding
Target of assay
18
control
5
RNA binding protein
5
transcription factor
1
histone
1
histone modification
1
narrow histone mark
Date released
386
February, 2021
August, 2017
23
October, 2018
19
June, 2019
12
July, 2019
3
October, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
444
bam
427
bigWig
401
tsv
29
bed narrowPeak
26
bigBed narrowPeak
26
fastq
20
bed bed3+
20
bed broadPeak
20
bigBed broadPeak
1
bedpe bed3+
1
tagAlign
Organism
453
Homo sapiens
Biosample type
451
tissue
2
primary cell
1
in vitro differentiated cells
Organ
751
pancreas
735
liver
559
connective tissue
489
epithelium
434
adipose tissue
390
heart
353
kidney
286
brain
233
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
69
blood
69
bodily fluid
68
musculature of body
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
454
AMP
Genome assembly (visualization)
430
hg19
427
GRCh38
Lab
454
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
hic
month_released!
August, 2017
BIOSAMPLE
ASSAY
454 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
3
1
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
2
1
1
renal pelvis
10
left renal pelvis
4
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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