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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
26
ChIP-seq
6
total RNA-seq
5
RRBS
4
Hi-C
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
26
DNA binding
9
Transcription
6
DNA methylation
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
20
broad histone mark
narrow histone mark
6
control
Date released
39
June, 2019
19
August, 2017
10
July, 2019
5
May, 2019
3
March, 2020
2
February, 2020
2
May, 2022
January, 2018
Available data
56
bigWig
51
bam
49
bed narrowPeak
41
bed broadPeak
41
bigBed narrowPeak
34
bed bed3+
33
bigBed broadPeak
10
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
hic
1
txt
Organism
80
Homo sapiens
Biosample type
70
tissue
10
primary cell
Organ
834
pancreas
726
liver
437
epithelium
330
kidney
284
heart
195
connective tissue
169
brain
141
vasculature
136
blood vessel
101
limb
92
adipose tissue
80
musculature of body
69
artery
67
blood
67
bodily fluid
58
eye
35
nerve
28
embryo
23
spleen
20
lung
18
ureter
14
vein
9
bone element
8
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
80
AMP
Genome assembly (visualization)
59
hg19
48
GRCh38
Lab
80
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
files.file_type!
hic
month_released!
February, 2021
January, 2018
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
80 results
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DNase-seq
ChIP-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
15
1
4
1
1
1
muscle of leg
13
5
1
muscle of arm
17
gastrocnemius medialis
1
4
psoas muscle
2
1
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primary cell
skeletal muscle satellite cell
5
1
1
skeletal muscle cell
1
1
1
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