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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
31
DNase-seq
17
total RNA-seq
8
snATAC-seq
5
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
247
DNA binding
45
DNA accessibility
24
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
162
histone
162
histone modification
107
narrow histone mark
55
broad histone mark
53
transcription factor
33
control
12
RNA binding protein
10
chromatin remodeller
Date released
88
November, 2017
86
October, 2019
29
June, 2019
May, 2019
27
December, 2018
18
January, 2019
17
July, 2019
17
November, 2018
16
October, 2017
12
February, 2020
8
January, 2021
2
March, 2020
1
February, 2023
1
January, 2018
Available data
271
bam
247
bigWig
229
bed narrowPeak
153
bigBed narrowPeak
118
tagAlign
78
fastq
44
bed broadPeak
35
bigBed broadPeak
33
bed bed3+
26
tsv
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
322
Homo sapiens
Biosample type
237
tissue
61
cell line
24
primary cell
Organ
937
pancreas
789
liver
684
connective tissue
513
epithelium
491
adipose tissue
369
heart
348
kidney
258
brain
183
vasculature
blood vessel
159
bone element
136
artery
115
limb
87
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
314
AMP
8
T1D
Genome assembly (visualization)
243
GRCh38
189
hg19
Lab
314
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
1
inconsistent control
Audit category:
4
missing controlled_by
files.file_type!
hic
month_released!
May, 2019
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
322 results
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ChIP-seq
DNase-seq
total RNA-seq
snATAC-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
cingulate gyrus
14
+ See 77 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
astrocyte of the cerebellum
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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