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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
6
pCHi-C
4
ChIP-seq
4
DNase-seq
1
RRBS
Assay category
32
DNA accessibility
19
Transcription
4
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
transcription factor
Date released
31
February, 2023
21
October, 2019
6
June, 2019
1
February, 2020
1
July, 2019
1
March, 2020
1
May, 2021
Available data
32
bed narrowPeak
6
bam
6
tsv
5
bigBed narrowPeak
5
bigWig
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
62
Homo sapiens
Biosample type
58
tissue
4
primary cell
Organ
816
pancreas
644
connective tissue
474
adipose tissue
429
epithelium
411
liver
373
heart
343
kidney
283
brain
224
vasculature
219
blood vessel
159
bone element
136
artery
122
limb
92
musculature of body
60
eye
43
nerve
34
embryo
20
lung
20
vein
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
61
AMP
1
T1D
Genome assembly (visualization)
33
hg19
5
GRCh38
Lab
61
AMP-T2D consortium
1
Kyle Gaulton, UCSD
files.file_type!
hic
month_released!
May, 2022
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
62 results
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Clear Filters
ATAC-seq
total RNA-seq
pCHi-C
ChIP-seq
DNase-seq
RRBS
tissue
islet of Langerhans
1
14
4
2
retina
15
3
3
pigmented layer of retina
12
2
thymus
2
primary cell
retinal pigment epithelial cell
2
1
1
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