Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
7
DNase-seq
6
total RNA-seq
4
single cell RNA-seq
2
Hi-C
2
RRBS
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
68
DNA binding
10
Transcription
9
DNA accessibility
4
DNA methylation
2
3D chromatin structure
Target of assay
51
histone
51
histone modification
31
broad histone mark
20
narrow histone mark
13
control
4
RNA binding protein
4
transcription factor
Date released
45
May, 2019
20
October, 2019
11
July, 2019
6
November, 2017
5
June, 2019
4
August, 2021
2
March, 2020
1
February, 2020
Available data
84
bam
71
bigWig
59
bed narrowPeak
58
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tsv
9
bed bed3+
6
fastq
3
bed bedMethyl
3
bigBed bedMethyl
hic
2
bedpe bed3+
2
hdf5
1
tar
Organism
94
Homo sapiens
Biosample type
60
tissue
34
primary cell
Organ
934
pancreas
789
liver
683
connective tissue
518
epithelium
490
adipose tissue
390
heart
353
kidney
270
brain
233
vasculature
227
blood vessel
159
bone element
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
94
AMP
Genome assembly (visualization)
71
hg19
64
GRCh38
Lab
94
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
hic
month_released!
October, 2017
organ_slims!
artery
BIOSAMPLE
ASSAY
94 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
single cell RNA-seq
Hi-C
RRBS
WGBS
ATAC-seq
FAIRE-seq
pCHi-C
tissue
aorta
13
1
4
2
1
ascending aorta
16
1
2
thoracic aorta
16
2
1
pericardium
1
primary cell
endothelial cell of umbilical vein
17
2
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
+ See 2 more…
See all biosamples
Download