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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
17
ChIP-seq
12
ATAC-seq
2
DNase-seq
1
FAIRE-seq
1
pCHi-C
Assay category
62
Transcription
17
DNA binding
15
DNA accessibility
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
150
February, 2021
20
October, 2019
8
February, 2023
1
May, 2021
Available data
88
txt
86
bam
73
bigWig
58
tsv
21
bed narrowPeak
13
bigBed narrowPeak
4
bed bed3
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
hic
1
bedpe bed3+
1
tar
Organism
179
Homo sapiens
Biosample type
158
tissue
21
primary cell
Organ
858
pancreas
731
liver
674
connective tissue
486
adipose tissue
449
epithelium
379
heart
350
kidney
283
brain
228
vasculature
223
blood vessel
159
bone element
140
artery
122
limb
94
musculature of body
60
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
178
AMP
1
T1D
Genome assembly (visualization)
85
hg19
78
GRCh38
Lab
178
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
files.file_type!
hic
month_released!
September, 2018
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
179 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
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primary cell
endothelial cell of umbilical vein
17
2
1
megakaryocyte
1
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