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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
38
DNase-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
FAIRE-seq
1
WGBS
Assay category
83
DNA binding
47
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
64
histone
64
histone modification
43
broad histone mark
21
narrow histone mark
19
control
Date released
89
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
Available data
134
bam
106
bigWig
105
bed narrowPeak
97
bigBed narrowPeak
40
bed broadPeak
40
bigBed broadPeak
38
bed bed3+
7
tsv
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
142
Homo sapiens
Biosample type
122
tissue
20
primary cell
Organ
858
pancreas
731
liver
674
connective tissue
486
adipose tissue
449
epithelium
379
heart
350
kidney
283
brain
228
vasculature
223
blood vessel
159
bone element
140
artery
122
limb
94
musculature of body
60
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
142
AMP
Genome assembly (visualization)
111
hg19
108
GRCh38
Lab
142
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
hic
month_released!
September, 2018
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
142 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
FAIRE-seq
WGBS
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
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primary cell
endothelial cell of umbilical vein
17
2
1
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