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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
32
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
1
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
82
DNA accessibility
32
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
715
February, 2021
368
November, 2017
335
May, 2021
323
August, 2017
314
May, 2020
306
August, 2021
207
June, 2019
205
February, 2023
200
May, 2022
169
October, 2019
168
July, 2018
108
July, 2019
86
May, 2019
78
December, 2017
73
November, 2018
65
October, 2018
59
September, 2020
58
September, 2018
57
April, 2019
55
November, 2019
51
March, 2020
49
April, 2018
47
September, 2023
31
February, 2018
25
February, 2020
25
May, 2024
21
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
10
January, 2019
8
December, 2018
8
January, 2021
7
August, 2020
7
January, 2018
4
August, 2018
4
March, 2019
4
March, 2023
3
June, 2018
1
August, 2022
1
October, 2022
Available data
123
tsv
95
bed narrowPeak
64
xls
57
txt
40
bam
36
bigWig
15
tagAlign
3
bed bed3+
2
bedpe bed3+
hic
1
vcf
Organism
305
Homo sapiens
Biosample type
228
tissue
41
cell line
35
in vitro differentiated cells
2
primary cell
Organ
129
kidney
92
heart
30
liver
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
4
epithelium
4
pancreas
2
artery
1
adipose tissue
Project
306
AMP
Genome assembly (visualization)
96
GRCh38
47
hg19
Lab
142
AMP-T2D consortium
127
Katalin Susztak, Upenn
33
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
hic
organ_slims!
bodily fluid
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
306 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
16
2
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
14
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
2
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