Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
5
GRO-seq
3
ATAC-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
94
DNA binding
4
Transcription
3
DNA accessibility
Target of assay
42
transcription factor
31
histone
31
histone modification
21
control
16
narrow histone mark
15
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
317
August, 2021
310
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
November, 2019
59
September, 2020
54
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
4
August, 2018
4
March, 2019
4
March, 2023
3
June, 2018
1
August, 2022
1
October, 2022
Available data
99
fastq
94
bam
80
bigWig
72
bed narrowPeak
50
bigBed narrowPeak
15
bed bed3+
hic
Organism
102
Homo sapiens
Biosample type
50
tissue
47
in vitro differentiated cells
6
stem cell
3
cell line
Organ
63
liver
19
epithelium
14
embryo
1
adipose tissue
1
blood
1
bodily fluid
1
connective tissue
1
musculature of body
Project
102
AMP
4
community
Genome assembly (visualization)
80
hg19
77
GRCh38
5
hg18
Lab
102
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
files.file_type!
hic
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
106 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
GRO-seq
ATAC-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
liver
38
right lobe of liver
10
adipose tissue
1
skeletal muscle tissue
1
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
1
Posterior foregut
5
1
definitive endodermal cell
5
1
primitive gut cell
5
1
+ See 1 more…
stem cell
hESC
3
1
SB Ad3.1
1
1
cell line
EndoC-BH1
1
1
GM12878
1
See all biosamples
Download