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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
19
ATAC-seq
3
single cell RNA-seq
1
Hi-C
1
total RNA-seq
Assay category
49
DNA binding
19
DNA accessibility
4
Transcription
1
3D chromatin structure
Target of assay
28
transcription factor
12
histone
12
histone modification
10
broad histone mark
7
control
2
RNA binding protein
2
chromatin remodeller
2
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
317
August, 2021
310
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
November, 2019
59
September, 2020
54
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
4
August, 2018
4
March, 2019
4
March, 2023
3
June, 2018
1
August, 2022
1
October, 2022
Available data
52
fastq
49
bam
44
bigWig
42
bed narrowPeak
36
bigBed narrowPeak
14
tagAlign
4
bed broadPeak
Organism
73
Homo sapiens
Biosample type
45
tissue
28
cell line
Organ
27
blood
27
bodily fluid
16
brain
14
kidney
8
spleen
5
pancreas
2
adipose tissue
2
connective tissue
1
liver
Project
73
AMP
Genome assembly (visualization)
56
GRCh38
44
hg19
Lab
58
AMP-T2D consortium
14
Katalin Susztak, Upenn
1
Stephen Parker, UMich
Audit category:
1
inconsistent control
Audit category:
4
missing controlled_by
files.file_type!
hic
BIOSAMPLE
ASSAY
73 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
Hi-C
total RNA-seq
tissue
brain
15
kidney
11
3
spleen
7
1
body of pancreas
4
adipose tissue
1
+ See 3 more…
cell line
GM12878
27
HepG2
1
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