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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
ChIP-seq
Assay category
199
DNA binding
Target of assay
355
transcription factor
200
histone modification
199
histone
128
control
100
narrow histone mark
99
broad histone mark
82
recombinant protein
69
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
42
April, 2019
35
May, 2024
32
August, 2017
27
May, 2020
17
December, 2017
15
November, 2017
13
May, 2019
10
October, 2019
6
August, 2021
2
June, 2019
Available data
179
bigWig
177
bed narrowPeak
140
bam
91
bigBed narrowPeak
58
tagAlign
44
fastq
14
bed broadPeak
14
bigBed broadPeak
3
bed bed3+
Organism
199
Homo sapiens
Biosample type
164
tissue
18
cell line
12
in vitro differentiated cells
5
primary cell
Organ
187
brain
151
pancreas
102
liver
97
heart
93
epithelium
78
connective tissue
71
vasculature
70
blood vessel
49
limb
33
musculature of body
32
adipose tissue
30
kidney
24
nerve
20
artery
15
vein
12
embryo
6
spleen
4
gonad
4
ovary
3
eye
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
199
AMP
Genome assembly (visualization)
165
GRCh38
144
hg19
Lab
161
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
3
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
12
inconsistent control read length
files.file_type!
hic
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
199 results
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ChIP-seq
tissue
liver
64
left cardiac atrium
35
heart left ventricle
24
heart
12
heart right ventricle
11
+ See 4 more…
cell line
HepG2
18
in vitro differentiated cells
hepatocyte
12
primary cell
hepatocyte
3
cardiac fibroblast
2
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