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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1864ChIP-seq
  • 531ATAC-seq
  • 212DNase-seq
  • 83snATAC-seq
  • 75WGBS
  • 68total RNA-seq
  • 57pCHi-C
  • 21RRBS
  • 11Hi-C
  • 5FAIRE-seq
  • 5GRO-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3single cell RNA-seq
  • 2HiChIP
  • 1DNAme array
  • 1whole genome sequencing assay
Assay category
  • 1864DNA binding
  • 831DNA accessibility
  • 97DNA methylation
  • 71Transcription
  • 113D chromatin structure
  • 1DNA sequencing
Target of assay
  • 1011histone modification
  • 1010histone
  • 514transcription factor
  • 512narrow histone mark
  • 497broad histone mark
  • 337control
  • 114RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 315August, 2017
  • 284October, 2019
  • 218June, 2019
  • 217May, 2021
  • 196May, 2020
  • 140May, 2022
  • 131August, 2021
  • 120May, 2019
  • 110February, 2023
  • 94December, 2017
  • 87November, 2018
  • 80April, 2019
  • 74October, 2018
  • 66February, 2021
  • 59July, 2019
  • 46September, 2018
  • 40May, 2024
  • 39March, 2020
  • 39November, 2019
  • 35December, 2018
  • 30January, 2019
  • 24February, 2018
  • 23October, 2017
  • 16January, 2021
  • 11May, 2023
  • 11September, 2017
  • 9April, 2020
  • 8January, 2018
  • 7August, 2020
  • 4March, 2019
  • 3September, 2020
  • 2November, 2020
  • 1August, 2018
  • 1August, 2022
Available data
  • 2050bam
  • 1832bigWig
  • 1811bed narrowPeak
  • 1036bigBed narrowPeak
  • 985fastq
  • 391tagAlign
  • 316bed broadPeak
  • 285bigBed broadPeak
  • 271bed bed3+
  • 122tsv
  • 101zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2946Homo sapiens
Biosample type
  • 1441tissue
  • 708primary cell
  • 537cell line
  • 252in vitro differentiated cells
  • 8stem cell
Organ
  • 599liver
  • 442pancreas
  • 314epithelium
  • 265brain
  • 228heart
  • 225kidney
  • 208connective tissue
  • 168vasculature
  • 162blood vessel
  • 119limb
  • 90adipose tissue
  • 86musculature of body
  • 85artery
  • 69blood
  • 69bodily fluid
  • 42eye
  • 42nerve
  • 25spleen
  • 23embryo
  • 20vein
  • 18ureter
  • 13bone element
  • 12skeleton
  • 10lung
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 2609AMP
  • 184T1D
  • 144HPAP
  • 9LungMap
Genome assembly (visualization)
  • 1853hg19
  • 1790GRCh38
  • 5hg18
Lab
  • 2347AMP-T2D consortium
  • 273Kyle Gaulton, UCSD
  • 144Klaus Kaestner, Upenn
  • 81Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 21Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 9Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 122inconsistent ontology term
  • 29audit script error
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.file_type!
  • hic
BIOSAMPLE
ASSAY

2946 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
snATAC-seq
WGBS
total RNA-seq
pCHi-C
RRBS
Hi-C
FAIRE-seq
GRO-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
single cell RNA-seq
HiChIP
DNAme array
whole genome sequencing assay
tissue
liver145202311
islet of Langerhans7168174111
kidney277513611
heart left ventricle3523411
body of pancreas35442
primary cell
monocyte8515211
pancreatic alpha cell133531
pancreatic beta cell132316
Langerhans cell48
CD8-positive, alpha-beta T cell33221
cell line
HepG2378115211
GM12878601
EndoC_BH11519232
Panc11311
smooth muscle cell of the coronary artery68
in vitro differentiated cells
adipocyte67811
embryonic stem cell4061
neural progenitor cell2110
pancreatic endoderm181
hepatocyte15
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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